James Fraser, Rishav Mitra, and Priyanka Bajaj reviewed Computational design of highly active de novo enzymes Molecular Biology Review published December 14, 2024 Preprint server bioRxiv
CJ San Felipe, James Fraser, and Jessica Flowers reviewed Heterogeneity in ligand-bound TRPV1: A comparison of methods in cryo-EM and molecular dynamics simulation Sensory SystemsMechanical EngineeringPhysical and Theoretical Chemistry Review published December 3, 2024 Preprint server bioRxiv
James Fraser, Jessica Flowers, and 1 other author reviewed Seeing Double: Molecular dynamics simulations reveal the stability of certain alternate protein conformations in crystal structures Materials ChemistryMolecular Biology Review published December 1, 2024 Preprint server bioRxiv
James Fraser and ziyue zou reviewed Effects of residue substitutions on the cellular abundance of proteins Molecular BiologyMaterials Chemistry Review published October 29, 2024 Preprint server bioRxiv
James Fraser reviewed Probing the modulation of enzyme kinetics by multi-temperature, time-resolved serial crystallography Materials ChemistryMolecular Biology Review published September 23, 2024 Preprint server bioRxiv
James Fraser reviewed Bioorthogonal labeling of chitin in pathogenic Candida species reveals biochemical mechanisms of hyphal growth and homeostasis Infectious DiseasesOrganic ChemistryFood Science Review published September 22, 2024 Preprint server bioRxiv
James Fraser and Avi J. Samelson reviewed Massively parallel genetic perturbation reveals the energetic architecture of an amyloid beta nucleation reaction PhysiologyMolecular Biology Review published September 22, 2024 Preprint server bioRxiv
James Fraser, Jessica Flowers, and 1 other author reviewed Unveiling Cas8 Dynamics and Regulation within a transposon-encoded Cascade-TniQ Complex Molecular BiologyCell Biology Review published September 1, 2024 Preprint server bioRxiv
James Fraser, Luisa Vasconcelos, Liyi Cheng, Samantha Lish, S. Chan Baek, Lang Ding, Alexandra Probst, Naiya Phillips, William Grubbe, Youchen Guan, and 2 other authors of the HHMI Transparent and Accountable Peer Review Training Pilot reviewed Virion morphology and on-virus spike protein structures of diverse SARS-CoV-2 variants Infectious DiseasesEcology Review published March 4, 2024 Preprint server bioRxiv
Christian Macdonald, James Fraser, David Byun, and Jeffrey Zheng reviewed The herbicide acetochlor causes lipid peroxidation by inhibition of glutathione peroxidase 4 Molecular BiologyPlant Science Review published August 11, 2023 Preprint server bioRxiv
Christian Macdonald, James Fraser, Ivan Chavez, Dani Rodea, and Ashraya Ravikumar reviewed Decoding the Cure-all Effects of Ginseng Molecular BiologyPharmacologyGeriatrics and Gerontology Review published June 30, 2023 Preprint server bioRxiv
Christian Macdonald, James Fraser, Ilayda Alkislar, and Nicholas Freitas reviewed Deep Boosted Molecular Dynamics (DBMD): Accelerating molecular simulations with Gaussian boost potentials generated using probabilistic Bayesian deep neural network Molecular BiologyPhysical and Theoretical Chemistry Review published June 30, 2023 Preprint server bioRxiv
Stephanie Wankowicz, Lena Bergmann, and James Fraser reviewed The mineralocorticoid receptor forms higher order oligomers upon DNA binding Endocrinology, Diabetes and MetabolismGeneticsMolecular Biology Review published June 23, 2023 Preprint server bioRxiv
Christian Macdonald and James Fraser reviewed The conserved protein CBA1 is required for vitamin B12uptake in different algal lineages Molecular BiologyRheumatologyPlant Science Review published June 1, 2023 Preprint server bioRxiv
Christian Macdonald, James Fraser, Zhengya Liu, and Catherine Shin reviewed Phosphorylation of pyruvate dehydrogenase marks the inhibition ofin vivoneuronal activity Cellular and Molecular NeuroscienceSocial PsychologyCognitive Neuroscience Review published May 26, 2023 Preprint server bioRxiv
Christian Macdonald, James Fraser, and Sonya Lee reviewed Higher-order epistasis creates idiosyncrasy, confounding predictions in protein evolution GeneticsMolecular Biology Review published October 14, 2022 Preprint server bioRxiv