PREreviews of “A Hybrid Pipeline for Covid-19 Screening Incorporating Lungs Segmentation and Wavelet Based Preprocessing of Chest X-Rays”

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A Hybrid Pipeline for Covid-19 Screening Incorporating Lungs Segmentation and Wavelet Based Preprocessing of Chest X-Rays

by Haikal Abdulah, Benjamin Huber, Hassan Abdallah, Luigi L. Palese, Hamid Soltanian-Zadeh, and Domenico L. Gatti

Posted: March 13, 2022
Server: medRxiv
DOI: 10.1101/2022.03.13.22272311

Abstract

We have developed a two-module pipeline for the detection of SARS-CoV-2 from chest X-rays (CXRs). Module 1 is a traditional convnet that generates masks of the lungs overlapping the heart and large vasa. Module 2 is a hybrid convnet that preprocesses CXRs and corresponding lung masks by means of the Wavelet Scattering Transform, and passes the resulting feature maps through an Attention block and a cascade of Separable Atrous Multiscale Convolutional Residual blocks to produce a class assignment as Covid or non-Covid. Module 1 was trained on a public dataset of 6395 CXRs with radiologist annotated lung contours. Module 2 was trained on a dataset of 2362 non-Covid and 1435 Covid CXRs acquired at the Henry Ford Health System Hospital in Detroit. Six distinct cross-validation models, were combined into an ensemble model that was used to classify the CXR images of the test set. An intuitive graphic interphase allows for rapid Covid vs. non-Covid classification of CXRs, and generates high resolution heat maps that identify the affected lung regions.

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PREreview by Daniela Saderi of the JMIR Publications

Authored by Daniela Saderi of the JMIR Publications

This review is the result of a Live Review organized and hosted by PREreview and JMIR Publications on September 2, 2022. The call was joined by 15 people, including reviewers, preprint authors, and facilitators.
Summary
The authors of this study present a novel strategy and methodology to classify …

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PREreviews of A Hybrid Pipeline for Covid-19 Screening Incorporating Lungs Segmentation and Wavelet Based Preprocessing of Chest X-Rays

1 PREreview

Summary